Setting up a Python environment

Contents

Setting up a Python environment#

Download the repository.
Extract the content of the downloaded zip file.
Open a terminal and change to the directory.
```
cd path/to/mnb-image-analysis-main
```
Create the Python environment.
```
pixi install --all
```
What happens?

The Python environment with all the dependencies is created in a sub-folder .pixi. You can activate the environment using:
```
pixi shell
```
And deactivate the environment with:
```
exit
```

Start the notebook#

In a terminal within the repository folder, i.e.:
```
cd path/to/mnb-image-analysis-main
```
Run following command to start Jupyter Lab:
```
pixi run jupyter lab
```

This will open a browser for interactive coding in noteoboks.